Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Transcription Initiation, Dna-Dependent (GO:0006352) Genes Targeted by hsa-mir-548n in CA Bladder Dyrskjot Cluster 37 Table contains all genes in the CA Bladder Dyrskjot cluster number 37. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-548n GO:0006352 55081 IFT57 intraflagellar transport 57 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:17367] T 54700 RRN3 RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30346] T Yes 55759 WDR12 WD repeat domain 12 [Source:HGNC Symbol;Acc:14098] zzz999 10286 BCAS2 breast carcinoma amplified sequence 2 [Source:HGNC Symbol;Acc:975] T 53371 NUP54 nucleoporin 54kDa [Source:HGNC Symbol;Acc:17359] T 55746 NUP133 nucleoporin 133kDa [Source:HGNC Symbol;Acc:18016] zzz999 26009 ZZZ3 zinc finger, ZZ-type containing 3 [Source:HGNC Symbol;Acc:24523] zzz999 23670 TMEM2 transmembrane protein 2 [Source:HGNC Symbol;Acc:11869] T 5917 RARS arginyl-tRNA synthetase [Source:HGNC Symbol;Acc:9870] zzz999 64149 C17orf75 chromosome 17 open reading frame 75 [Source:HGNC Symbol;Acc:30173] zzz999 80777 CYB5B cytochrome b5 type B (outer mitochondrial membrane) [Source:HGNC Symbol;Acc:24374] T 657 BMPR1A bone morphogenetic protein receptor, type IA [Source:HGNC Symbol;Acc:1076] T 8615 USO1 USO1 vesicle docking protein homolog (yeast) [Source:HGNC Symbol;Acc:30904] T 55159 RFWD3 ring finger and WD repeat domain 3 [Source:HGNC Symbol;Acc:25539] zzz999 54819 ZCCHC10 zinc finger, CCHC domain containing 10 [Source:HGNC Symbol;Acc:25954] P T 51138 COPS4 COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) [Source:HGNC Symbol;Acc:16702] zzz999 5867 RAB4A RAB4A, member RAS oncogene family [Source:HGNC Symbol;Acc:9781] zzz999 54816 ZNF280D zinc finger protein 280D [Source:HGNC Symbol;Acc:25953] zzz999 25909 AHCTF1 AT hook containing transcription factor 1 [Source:HGNC Symbol;Acc:24618] P T 6905 TBCE tubulin folding cofactor E [Source:HGNC Symbol;Acc:11582] zzz999 9015 TAF1A TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa [Source:HGNC Symbol;Acc:11532] zzz999 Yes 11137 PWP1 PWP1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:17015] zzz999 8766 RAB11A RAB11A, member RAS oncogene family [Source:HGNC Symbol;Acc:9760] P T 1124 CHN2 chimerin (chimaerin) 2 [Source:HGNC Symbol;Acc:1944] zzz999 7019 TFAM transcription factor A, mitochondrial [Source:HGNC Symbol;Acc:11741] T Yes 57343 ZNF304 zinc finger protein 304 [Source:HGNC Symbol;Acc:13505] T 6595 SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 [Source:HGNC Symbol;Acc:11098] zzz999 6903 TBCC tubulin folding cofactor C [Source:HGNC Symbol;Acc:11580] zzz999 51691 NAA38 N(alpha)-acetyltransferase 38, NatC auxiliary subunit [Source:HGNC Symbol;Acc:20471] T 51167 CYB5R4 cytochrome b5 reductase 4 [Source:HGNC Symbol;Acc:20147] zzz999 9453 GGPS1 geranylgeranyl diphosphate synthase 1 [Source:HGNC Symbol;Acc:4249] T 637 BID BH3 interacting domain death agonist [Source:HGNC Symbol;Acc:1050] zzz999 7769 ZNF226 zinc finger protein 226 [Source:HGNC Symbol;Acc:13019] zzz999 29889 GNL2 guanine nucleotide binding protein-like 2 (nucleolar) [Source:HGNC Symbol;Acc:29925] zzz999 79568 C2orf47 chromosome 2 open reading frame 47 [Source:HGNC Symbol;Acc:26198] P T 9101 USP8 ubiquitin specific peptidase 8 [Source:HGNC Symbol;Acc:12631] zzz999 9587 MAD2L1BP MAD2L1 binding protein [Source:HGNC Symbol;Acc:21059] zzz999 3066 HDAC2 histone deacetylase 2 [Source:HGNC Symbol;Acc:4853] T 6741 SSB Sjogren syndrome antigen B (autoantigen La) [Source:HGNC Symbol;Acc:11316] zzz999 23300 ATMIN ATM interactor [Source:HGNC Symbol;Acc:29034] zzz999 10472 ZNF238 zinc finger protein 238 [Source:HGNC Symbol;Acc:13030] zzz999 7358 UGDH UDP-glucose 6-dehydrogenase [Source:HGNC Symbol;Acc:12525] zzz999 92 ACVR2A activin A receptor, type IIA [Source:HGNC Symbol;Acc:173] P T 8443 GNPAT glyceronephosphate O-acyltransferase [Source:HGNC Symbol;Acc:4416] T 9491 PSMF1 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) [Source:HGNC Symbol;Acc:9571] T 51455 REV1 REV1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:14060] zzz999 27067 STAU2 staufen, RNA binding protein, homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:11371] P T 10973 ASCC3 activating signal cointegrator 1 complex subunit 3 [Source:HGNC Symbol;Acc:18697] zzz999 79728 PALB2 partner and localizer of BRCA2 [Source:HGNC Symbol;Acc:26144] zzz999 7637 ZNF84 Zinc finger protein 84 [Source:UniProtKB/Swiss-Prot;Acc:P51523] T 22850 ADNP2 ADNP homeobox 2 [Source:HGNC Symbol;Acc:23803] zzz999 10600 USP16 ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:12614] zzz999 7738 ZNF184 zinc finger protein 184 [Source:HGNC Symbol;Acc:12975] zzz999 60560 NAA35 N(alpha)-acetyltransferase 35, NatC auxiliary subunit [Source:HGNC Symbol;Acc:24340] T 55364 IMPACT Impact homolog (mouse) [Source:HGNC Symbol;Acc:20387] T 55326 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) [Source:HGNC Symbol;Acc:20886] zzz999 55153 SDAD1 SDA1 domain containing 1 [Source:HGNC Symbol;Acc:25537] T 868 CBLB Cas-Br-M (murine) ecotropic retroviral transforming sequence b [Source:HGNC Symbol;Acc:1542] zzz999 85453 TSPYL5 TSPY-like 5 [Source:HGNC Symbol;Acc:29367] zzz999 55781 RIOK2 RIO kinase 2 (yeast) [Source:HGNC Symbol;Acc:18999] zzz999 29087 THYN1 thymocyte nuclear protein 1 [Source:HGNC Symbol;Acc:29560] T 1022 CDK7 cyclin-dependent kinase 7 [Source:HGNC Symbol;Acc:1778] zzz999 Yes 65983 GRAMD3 GRAM domain containing 3 [Source:HGNC Symbol;Acc:24911] zzz999 5955 RCN2 reticulocalbin 2, EF-hand calcium binding domain [Source:HGNC Symbol;Acc:9935] P T 54969 C4orf27 chromosome 4 open reading frame 27 [Source:HGNC Symbol;Acc:26051] zzz999 22868 FASTKD2 FAST kinase domains 2 [Source:HGNC Symbol;Acc:29160] zzz999 29117 BRD7 bromodomain containing 7 [Source:HGNC Symbol;Acc:14310] P T 79691 QTRTD1 queuine tRNA-ribosyltransferase domain containing 1 [Source:HGNC Symbol;Acc:25771] T 26973 CHORDC1 cysteine and histidine-rich domain (CHORD) containing 1 [Source:HGNC Symbol;Acc:14525] T 9451 EIF2AK3 eukaryotic translation initiation factor 2-alpha kinase 3 [Source:HGNC Symbol;Acc:3255] P T 79830 ZMYM1 zinc finger, MYM-type 1 [Source:HGNC Symbol;Acc:26253] T 79664 NARG2 NMDA receptor regulated 2 [Source:HGNC Symbol;Acc:29885] T 55256 ADI1 acireductone dioxygenase 1 [Source:HGNC Symbol;Acc:30576] zzz999 55253 TYW1 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25598] zzz999 55255 WDR41 WD repeat domain 41 [Source:HGNC Symbol;Acc:25601] zzz999 7737 RNF113A ring finger protein 113A [Source:HGNC Symbol;Acc:12974] zzz999 55425 KIAA1704 KIAA1704 [Source:HGNC Symbol;Acc:20298] zzz999 9541 CIR1 corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:24217] zzz999 79609 METTL21D methyltransferase like 21D [Source:HGNC Symbol;Acc:20352] zzz999 64216 TFB2M transcription factor B2, mitochondrial [Source:HGNC Symbol;Acc:18559] zzz999 Yes 55093 WDYHV1 WDYHV motif containing 1 [Source:HGNC Symbol;Acc:25490] zzz999 79624 C6orf211 chromosome 6 open reading frame 211 [Source:HGNC Symbol;Acc:17872] T 54465 ETAA1 Ewing tumor-associated antigen 1 [Source:HGNC Symbol;Acc:24648] T 51232 CRIM1 cysteine rich transmembrane BMP regulator 1 (chordin-like) [Source:HGNC Symbol;Acc:2359] T 892 CCNC cyclin C [Source:HGNC Symbol;Acc:1581] zzz999 51103 NDUFAF1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 [Source:HGNC Symbol;Acc:18828] zzz999 29079 MED4 mediator complex subunit 4 [Source:HGNC Symbol;Acc:17903] T Yes 55172 C14orf104 chromosome 14 open reading frame 104 [Source:HGNC Symbol;Acc:20188] T 9 NAT1 N-acetyltransferase 1 (arylamine N-acetyltransferase) [Source:HGNC Symbol;Acc:7645] zzz999 60491 NIF3L1 NIF3 NGG1 interacting factor 3-like 1 (S. pombe) [Source:HGNC Symbol;Acc:13390] zzz999 7771 ZNF285 zinc finger protein 285 [Source:HGNC Symbol;Acc:13079] T 9926 LPGAT1 lysophosphatidylglycerol acyltransferase 1 [Source:HGNC Symbol;Acc:28985] T 10944 C11orf58 chromosome 11 open reading frame 58 [Source:HGNC Symbol;Acc:16990] T 96764 TGS1 trimethylguanosine synthase 1 [Source:HGNC Symbol;Acc:17843] T 23029 RBM34 RNA binding motif protein 34 [Source:HGNC Symbol;Acc:28965] zzz999 9921 RNF10 ring finger protein 10 [Source:HGNC Symbol;Acc:10055] zzz999 221078 NSUN6 NOP2/Sun domain family, member 6 [Source:HGNC Symbol;Acc:23529] zzz999 54942 C9orf6 chromosome 9 open reading frame 6 [Source:HGNC Symbol;Acc:1364] T 7702 ZNF143 zinc finger protein 143 [Source:HGNC Symbol;Acc:12928] P T 1024 CDK8 cyclin-dependent kinase 8 [Source:HGNC Symbol;Acc:1779] zzz999 39 ACAT2 acetyl-CoA acetyltransferase 2 [Source:HGNC Symbol;Acc:94] zzz999 9337 CNOT8 CCR4-NOT transcription complex, subunit 8 [Source:HGNC Symbol;Acc:9207] T 5481 PPID peptidylprolyl isomerase D [Source:HGNC Symbol;Acc:9257] zzz999 10782 ZNF274 zinc finger protein 274 [Source:HGNC Symbol;Acc:13068] zzz999 6934 TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:HGNC Symbol;Acc:11641] zzz999 22863 ATG14 ATG14 autophagy related 14 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19962] T 51187 RSL24D1 ribosomal L24 domain containing 1 [Source:HGNC Symbol;Acc:18479] T 2033 EP300 E1A binding protein p300 [Source:HGNC Symbol;Acc:3373] zzz999 81847 RNF146 ring finger protein 146 [Source:HGNC Symbol;Acc:21336] T 11103 KRR1 KRR1, small subunit (SSU) processome component, homolog (yeast) [Source:HGNC Symbol;Acc:5176] T 399979 SNX19 sorting nexin 19 [Source:HGNC Symbol;Acc:21532] T 10363 HMG20A high mobility group 20A [Source:HGNC Symbol;Acc:5001] T 11171 STRAP serine/threonine kinase receptor associated protein [Source:HGNC Symbol;Acc:30796] zzz999 54874 FNBP1L formin binding protein 1-like [Source:HGNC Symbol;Acc:20851] T 79666 PLEKHF2 pleckstrin homology domain containing, family F (with FYVE domain) member 2 [Source:HGNC Symbol;Acc:20757] P T 9147 NEMF nuclear export mediator factor [Source:HGNC Symbol;Acc:10663] zzz999 55623 THUMPD1 THUMP domain containing 1 [Source:HGNC Symbol;Acc:23807] T 7507 XPA xeroderma pigmentosum, complementation group A [Source:HGNC Symbol;Acc:12814] zzz999 26589 MRPL46 mitochondrial ribosomal protein L46 [Source:HGNC Symbol;Acc:1192] zzz999 7580 ZNF32 zinc finger protein 32 [Source:HGNC Symbol;Acc:13095] zzz999 440138 ALG11 asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast) [Source:HGNC Symbol;Acc:32456] zzz999 1977 EIF4E eukaryotic translation initiation factor 4E [Source:HGNC Symbol;Acc:3287] zzz999 56947 MFF mitochondrial fission factor [Source:HGNC Symbol;Acc:24858] zzz999 55161 TMEM33 transmembrane protein 33 [Source:HGNC Symbol;Acc:25541] zzz999 2271 FH fumarate hydratase [Source:HGNC Symbol;Acc:3700] zzz999 8087 FXR1 fragile X mental retardation, autosomal homolog 1 [Source:HGNC Symbol;Acc:4023] zzz999 23219 FBXO28 F-box protein 28 [Source:HGNC Symbol;Acc:29046] P T 10464 PIBF1 progesterone immunomodulatory binding factor 1 [Source:HGNC Symbol;Acc:23352] zzz999 57050 UTP3 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24477] T 51567 TDP2 tyrosyl-DNA phosphodiesterase 2 [Source:HGNC Symbol;Acc:17768] T 8939 FUBP3 far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005] T 10987 COPS5 COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) [Source:HGNC Symbol;Acc:2240] zzz999 3612 IMPA1 inositol(myo)-1(or 4)-monophosphatase 1 [Source:HGNC Symbol;Acc:6050] T 51585 PCF11 PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:30097] P T 9419 CRIPT cysteine-rich PDZ-binding protein [Source:HGNC Symbol;Acc:14312] T 5877 RABIF RAB interacting factor [Source:HGNC Symbol;Acc:9797] T 64431 ACTR6 ARP6 actin-related protein 6 homolog (yeast) [Source:HGNC Symbol;Acc:24025] zzz999 11097 NUPL2 nucleoporin like 2 [Source:HGNC Symbol;Acc:17010] T 10440 TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:HGNC Symbol;Acc:17315] zzz999 91298 C12orf29 chromosome 12 open reading frame 29 [Source:HGNC Symbol;Acc:25322] P T 4236 MFAP1 microfibrillar-associated protein 1 [Source:HGNC Symbol;Acc:7032] T 9821 RB1CC1 RB1-inducible coiled-coil 1 [Source:HGNC Symbol;Acc:15574] P T 25898 RCHY1 ring finger and CHY zinc finger domain containing 1 [Source:HGNC Symbol;Acc:17479] T 79441 HAUS3 HAUS augmin-like complex, subunit 3 [Source:HGNC Symbol;Acc:28719] zzz999 23786 BCL2L13 BCL2-like 13 (apoptosis facilitator) [Source:HGNC Symbol;Acc:17164] zzz999 9270 ITGB1BP1 integrin beta 1 binding protein 1 [Source:HGNC Symbol;Acc:23927] T 7699 ZNF140 zinc finger protein 140 [Source:HGNC Symbol;Acc:12925] zzz999 10668 CGRRF1 cell growth regulator with ring finger domain 1 [Source:HGNC Symbol;Acc:15528] zzz999 27042 DIEXF digestive organ expansion factor homolog (zebrafish) [Source:HGNC Symbol;Acc:28440] T 9477 MED20 mediator complex subunit 20 [Source:HGNC Symbol;Acc:16840] zzz999 6726 SRP9 signal recognition particle 9kDa [Source:HGNC Symbol;Acc:11304] P T 8050 PDHX pyruvate dehydrogenase complex, component X [Source:HGNC Symbol;Acc:21350] T 81608 FIP1L1 FIP1 like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:19124] zzz999 2058 EPRS glutamyl-prolyl-tRNA synthetase [Source:HGNC Symbol;Acc:3418] zzz999 663 BNIP2 BCL2/adenovirus E1B 19kDa interacting protein 2 [Source:HGNC Symbol;Acc:1083] zzz999 664 BNIP3 BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] zzz999 10253 SPRY2 sprouty homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:11270] zzz999 5431 POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Source:HGNC Symbol;Acc:9188] zzz999 Yes 7159 TP53BP2 tumor protein p53 binding protein, 2 [Source:HGNC Symbol;Acc:12000] zzz999 8195 MKKS McKusick-Kaufman syndrome [Source:HGNC Symbol;Acc:7108] zzz999 60684 C4orf41 chromosome 4 open reading frame 41 [Source:HGNC Symbol;Acc:25751] zzz999 10302 SNAPC5 small nuclear RNA activating complex, polypeptide 5, 19kDa [Source:HGNC Symbol;Acc:15484] zzz999 Yes 10556 RPP30 ribonuclease P/MRP 30kDa subunit [Source:HGNC Symbol;Acc:17688] T 81566 CSRNP2 cysteine-serine-rich nuclear protein 2 [Source:HGNC Symbol;Acc:16006] T 55269 PSPC1 paraspeckle component 1 [Source:HGNC Symbol;Acc:20320] P T 8439 NSMAF neutral sphingomyelinase (N-SMase) activation associated factor [Source:HGNC Symbol;Acc:8017] T 8491 MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 [Source:HGNC Symbol;Acc:6865] P T 25821 MTO1 mitochondrial translation optimization 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19261] zzz999 9166 EBAG9 estrogen receptor binding site associated, antigen, 9 [Source:HGNC Symbol;Acc:3123] zzz999 28998 MRPL13 mitochondrial ribosomal protein L13 [Source:HGNC Symbol;Acc:14278] zzz999 51307 FAM53C family with sequence similarity 53, member C [Source:HGNC Symbol;Acc:1336] P T 3550 IK IK cytokine, down-regulator of HLA II [Source:HGNC Symbol;Acc:5958] zzz999 5828 PEX2 peroxisomal biogenesis factor 2 [Source:HGNC Symbol;Acc:9717] zzz999 4673 NAP1L1 nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637] zzz999 1070 CETN3 centrin, EF-hand protein, 3 [Source:HGNC Symbol;Acc:1868] zzz999 57149 LYRM1 LYR motif containing 1 [Source:HGNC Symbol;Acc:25074] zzz999 11104 KATNA1 katanin p60 (ATPase containing) subunit A 1 [Source:HGNC Symbol;Acc:6216] zzz999 4528 MTIF2 mitochondrial translational initiation factor 2 [Source:HGNC Symbol;Acc:7441] zzz999 55696 RBM22 RNA binding motif protein 22 [Source:HGNC Symbol;Acc:25503] zzz999 55907 CMAS cytidine monophosphate N-acetylneuraminic acid synthetase [Source:HGNC Symbol;Acc:18290] P T 7257 TSNAX translin-associated factor X [Source:HGNC Symbol;Acc:12380] T 11108 PRDM4 PR domain containing 4 [Source:HGNC Symbol;Acc:9348] zzz999 10190 TXNDC9 thioredoxin domain containing 9 [Source:HGNC Symbol;Acc:24110] zzz999 51377 UCHL5 ubiquitin carboxyl-terminal hydrolase L5 [Source:HGNC Symbol;Acc:19678] zzz999 2961 GTF2E2 general transcription factor IIE, polypeptide 2, beta 34kDa [Source:HGNC Symbol;Acc:4651] zzz999 Yes 55500 ETNK1 ethanolamine kinase 1 [Source:HGNC Symbol;Acc:24649] T 55614 KIF16B kinesin family member 16B [Source:HGNC Symbol;Acc:15869] T

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